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ADF, the Amsterdam Density Functional program for the treatment of complex chemical problems.
http://www.scm.com
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A program for molecular orbital analysis. It calculates the MO compositions of the constituent chemical fragments from the output files of various quantum-chemical packages, analyzes chemical bonding using overlap populations, and generates density-of-states spectra. License required.
http://www.sg-chem.net/
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A free molecular modeling program for Windows9x operating systems with 3D-builder, various ab initio calculation modules and simple molecular mechanics.
http://www.planaria-software.com/
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Windows program for analyzing and visualizing molecules using the theory of Richard Bader. Demo version available.
http://www.aim2000.de
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Site critical of Gaussian, Inc.'s licensing practices. Reports allegations of Gaussian banning "competitors" from using their product.
http://www.bannedbygaussian.org/
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Simulates complex chemical kinetics in reacting flow.
http://www.chemkin.com/
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Commercial conformational searching and analysis tools for Linux, Mac OS X, and Windows. Compatible w/CAChe, ChemOffice, and Amber. Screen shots, data sheet, ordering, and trial versions available.
http://www.conflex.us/
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Unix program to compute the electronic structure of periodic systems within Hartree Fock, density functional or various hybrid approximations. Documentation, licensing, and downloads available.
http://www.crystal.unito.it/
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Web interface for simplifying the creation of GAMESS UK input files and the processing of the output files.
http://www.photondesign.com
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Molecular Design Software Suite for Irix, Linux, and Windows. Includes features such as structure generation, molecular mechanics, conformational search, molecular dynamics, and similarity analysis. Free for academic users.
http://www.moloc.ch/
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The "Massively Parallel Quantum Chemistry Program". Computes properties of atoms and molecules from first principles using the time independent Schrödinger equation. Free, available under the GPL.
http://www.mpqc.org/
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Web interface for the quantum chemistry packages MOPAC, Gaussian, and GAMESS. Free version available for download; pro version also available.
http://www.webmo.net/
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Open source quantum chemistry program for atoms and molecules using the quantum Monte Carlo method.
http://www.zori-code.com/
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